All pull requests

Pull requests

• Honor the requested coefficient in shrinkage grid fallback

  #472·Intron7 opened Sep 23, 2026·

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• Preserve dispersion regularization in optimizer fallback

  #471·Intron7 opened Sep 23, 2026·

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• Fix prior curvature in shrinkage Hessian

  #470·Intron7 opened Sep 23, 2026·

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• Chore(deps): bump astral-sh/setup-uv from 10.0.1 to 10.1.0 in the actions-deps group

  dependenciesgithub_actions
  #469·dependabot[bot] opened Sep 20, 2026·

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• feat: add likelihood ratio test (LRT) to DeseqStats

  #452·pankev-in opened Jul 24, 2026·

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• Add tximport-style transcript-length normalization and pytximport support

  #451·gitbenlewis opened Jul 16, 2026·

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• [pre-commit.ci] pre-commit autoupdate

  #449·pre-commit-ci[bot] opened Jun 15, 2026·

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• add cupy backend

  #447·Intron7 opened Apr 21, 2026·

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• Feature/gpu inference

  #445·maflot opened Apr 20, 2026·

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• jax deseq2

  #441·adamgayoso opened Feb 25, 2026·

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• Normalization factors and DESeqDataSetFromTximport equivalent

  #412·maltekuehl opened Sep 13, 2025·

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• fix: improve the numerical stability of lfc_shrink

  #370·BorisMuzellec opened Feb 28, 2025·

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• Add Relative Log Expression (RLE) Plots

  #348·jonathjd opened Dec 7, 2024·

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• ENH volcano plots

  #317·BorisMuzellec opened Sep 20, 2024·

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• ENH implement local fit for trend curve

  #234·BorisMuzellec opened Feb 2, 2024·

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• Adding an example with real data

  #180·jbschiratti opened Oct 17, 2023·

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• FEAT: Implement Likelihood-Ratio test

  #178·PABannier opened Oct 17, 2023·

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