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@YuLab-SMU

Bioinformatics Group @ SMU

Research group led by Prof. Guangchuang Yu in School of Basic Medical Sciences, Southern Medical University

长期招聘博士后,欢迎咨询。


The research group has developed a variety of widely recognized bioinformatics tools in the fields of biomedical knowledge mining and knowledge discovery (e.g., clusterProfiler, GOSemSim, DOSE), phylogenetic data integration and visualization (e.g., treeio, ggtree, ggtreeExtra), metagenomic data analysis (e.g., MicrobiotaProcess) and data visualization (e.g., ggbreak, aplot, enrichplot, ChIPseeker), etc., to help biologists explore and understand data.

Links

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  1. clusterProfiler clusterProfiler Public

    📊 A universal enrichment tool for interpreting omics data

    R 1.2k 267

  2. ggtree ggtree Public

    🎄Visualization and annotation of phylogenetic trees

    R 934 183

  3. aisdk aisdk Public

    🤖 A production-grade framework for building AI-powered applications in R.

    R 75 8

  4. Rho Rho Public

    an agent-native desktop workbench for R

    Rust 33 10

  5. SVP SVP Public

    Spatially Variable Profiler

    R 12

  6. sclet sclet Public

    A State-Aware Single-Cell and Spatial Transcriptomics Toolkit for SingleCellExperiment

    R 24 8

Repositories

Showing 10 of 141 repositories
  • biomedical-knowledge-mining-book Public

    📖 Biomedical knowledge mining using GOSemSim and clusterProfiler

    YuLab-SMU/biomedical-knowledge-mining-book's past year of commit activity
    TeX 96 30 0 0 Updated Sep 23, 2026
  • enrichplot Public

    Visualization of Functional Enrichment Result

    YuLab-SMU/enrichplot's past year of commit activity
    R 260 75 67 0 Updated Sep 22, 2026
  • clusterProfiler Public

    📊 A universal enrichment tool for interpreting omics data

    YuLab-SMU/clusterProfiler's past year of commit activity
    R 1,236 267 287 0 Updated Sep 22, 2026
  • enrichit Public

    C++ Implementations of Functional Enrichment Analysis

    YuLab-SMU/enrichit's past year of commit activity
    R 4 4 0 0 Updated Sep 22, 2026
  • meshes Public

    🩺 MeSH Enrichment and Semantic analyses

    YuLab-SMU/meshes's past year of commit activity
    R 13 4 0 0 Updated Sep 22, 2026
  • DOSE Public

    😷 Disease Ontology Semantic and Enrichment analysis

    YuLab-SMU/DOSE's past year of commit activity
    R 125 34 16 0 Updated Sep 22, 2026
  • ReactomePA Public

    Reactome Pathway Analysis

    YuLab-SMU/ReactomePA's past year of commit activity
    R 46 10 16 0 Updated Sep 22, 2026
  • ggtangle Public

    Draw Network with Data

    YuLab-SMU/ggtangle's past year of commit activity
    R 10 3 0 0 Updated Sep 22, 2026
  • aplot Public

    Decorate a plot with associated information

    YuLab-SMU/aplot's past year of commit activity
    R 131 17 5 0 Updated Sep 22, 2026
  • ggbreak Public

    💔 An implementation of scale functions for setting axis breaks of a 'gg' plot.

    YuLab-SMU/ggbreak's past year of commit activity
    R 148 7 1 0 Updated Sep 22, 2026