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@Genentech

Genentech

Dedicated to pursuing groundbreaking science to discover and develop medicines

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  1. gReLU gReLU Public

    gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.

    Python 365 60

  2. SpatialAgent SpatialAgent Public

    A harness for spatial biology

    Python 213 27

  3. equifold equifold Public

    Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation

    Python 131 18

  4. gneprop gneprop Public

    GNEprop is a graph neural network-based model to predict antibacterial activity from molecular structures in virtual screening settings.

    Jupyter Notebook 48 6

  5. scallops scallops Public

    SCALLOPS (Scalable Library for Optical Pooled Screens) is a comprehensive Python package designed to streamline and scale the analysis of Optical Pooled Screens (OPS) for biological data.

    Python 16 4

  6. AssayBench AssayBench Public

    AssayBench: An Assay-Level Virtual Cell Benchmark for LLMs and Agents

    Python 13

Repositories

Showing 10 of 169 repositories
  • rdborrow Public

    External Control Borrowing for Rare Disease Simulation and Analysis

    Genentech/rdborrow's past year of commit activity
    R 0 0 6 1 Updated Sep 23, 2026
  • exohub Public

    ExoHub — a platform for versioning and sharing terabyte-scale scientific datasets on top of git-annex, without bloating Git

    Genentech/exohub's past year of commit activity
    Go 1 MIT 0 0 0 Updated Sep 23, 2026
  • scallops Public

    SCALLOPS (Scalable Library for Optical Pooled Screens) is a comprehensive Python package designed to streamline and scale the analysis of Optical Pooled Screens (OPS) for biological data.

    Genentech/scallops's past year of commit activity
    Python 16 4 2 3 Updated Sep 23, 2026
  • SpatialAgent Public

    A harness for spatial biology

    Genentech/SpatialAgent's past year of commit activity
    Python 213 MIT 27 1 0 Updated Sep 22, 2026
  • sceps Public

    scEPS integrates GWAS and single-cell disease cell atlas data to identify disease-associated cell neighborhoods.

    Genentech/sceps's past year of commit activity
    Python 5 MIT 0 0 0 Updated Sep 22, 2026
  • ml-burden Public

    Code release for "Markedly divergent performance of variant annotation methods for gene-level association testing" (Irudayanathan and Aguirre et. al. 2026)

    Genentech/ml-burden's past year of commit activity
    Jupyter Notebook 2 MIT 0 0 0 Updated Sep 22, 2026
  • checked Public

    batch R CMD check management

    Genentech/checked's past year of commit activity
    R 9 3 15 1 Updated Sep 21, 2026
  • gReLU Public

    gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.

    Genentech/gReLU's past year of commit activity
    Python 365 MIT 60 19 8 Updated Sep 19, 2026
  • pinard Public

    Orchestration platform for autonomous AI coding agents — turns issues into reviewed merge requests across GitLab and GitHub, with a conductor/worker hierarchy, durable messaging, and persistent memory.

    Genentech/pinard's past year of commit activity
    Go 4 MIT 0 0 0 Updated Sep 18, 2026
  • gmap-gsnap Public

    Programs for aligning long and short RNA-seq and DNA-seq reads to genomes

    Genentech/gmap-gsnap's past year of commit activity
    C 1 1 0 0 Updated Sep 18, 2026
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